lsbnb/busco3 repository overview

⁠Usage

⁠Step 1.

move BUSCO lineage (https://busco.ezlab.org/⁠) (unzip it) and genome to the same folder

⁠Step 2.

sudo docker run -it -v $PWD:$PWD lsbnb/busco3 bash -c "cd $PWD ; run_BUSCO.py -i genome.fasta -o output_folder -l busco_lineage -m mode -sp augustus_species -c thread_number" bg %3

mode: Mode of analysis, Valid options: geno, ogs, trans.

⁠Example

sudo docker run -it -v $PWD:$PWD lsbnb/busco3 bash -c "cd $PWD ; run_BUSCO.py -i jp_eel.fasta -o busco_jpeel -l vertebrata_odb9 -m geno -sp zebrafish -c 32" bg %3