lukaszimmermann/thehyve-python_transmart_loader repository overview

⁠Usage

You probably want to get a local copy of the image first. Select a tag <tag>, then do:

docker pull lukaszimmermann/thehyve-python_transmart_loader:<tag>
docker tag lukaszimmermann/thehyve-python_transmart_loader:<tag> transmart_loader 

Assume now you want to generate CSV files for TranSMART Copy for a file input.json in the current working directory. Then you can do:

 docker run --rm -v $PWD:/data transmart_loader /data/input.json /data/results

Then, the resulting CSV files will be in the results directory in the current working directory (they will be owned by root, however, so you need to chown).

⁠Tags

Tags are based on git revisions of the Git repositoty at https://github.com/thehyve/python_transmart_loader/⁠

Hence, tag git-<branch>-<revision> represents the version of the code at this revision.