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luxendr13/modkit-accelerated

By luxendr13

•Updated 6 months ago

A custom container to accelerate modkit pileup for transcriptome analysis

Image
0

419

luxendr13/modkit-accelerated repository overview

⁠Modkit Transcriptome Accelerator

Custom Modkit container with Python dependencies for transcriptome modification analysis.

⁠Base Image

Built on top of ontresearch/modkit

⁠Additional Tools

  • Python 3.10
  • pandas, polars, numpy, pysam, tqdm
  • samtools
  • Managed via micromamba

⁠Usage

docker pull luxendr13/modkit-transcriptome:latest

Tag summary

Content type

Image

Digest

sha256:7e3e4e3ae…

Size

251.1 MB

Last updated

6 months ago

docker pull luxendr13/modkit-accelerated