m1vg/tracking_software repository overview

⁠Docker Image

This docker image contains a stable version of TaxisPy, a Python-based Software for the Quantitative Analysis of Bacterial Chemotaxis, developed by Miguel A. Valderrama-Gómez ([email protected]⁠) in the Savageau Laboratory (https://savageaulab.wordpress.com/⁠) @ UC Davis. Rebecca A. Schomer ([email protected]⁠) @ UC Davis in the Parales Lab experimentally validated and optimized the input conditions for quantification of bacterial movement for multiple organisms. This program will replace challenging and time-consuming quantitative capillary assays that we currently use to quantify bacterial chemotaxis and allow rapid data collection for a wide-range of motile bacterial species.

⁠Getting Started

To use this Docker Image:

1. Download Image: docker pull m1vg/tracking_software:super_user

2. Create Container: docker run -d -p 8888:8888 m1vg/tracking_software:super_user

3. Open http://localhost:8888⁠ in a browser window

see special instructions for Windows users: https://savageaulab.wordpress.com/docker-image-for-windows/⁠

Current software development and maintenance is being performed by Miguel Á. Valderrama-Gómez ([email protected]⁠).