mahdisabetkish/brainssl repository overview

⁠brainssl

Label-efficient learning on brain MRI and resting-state fMRI: tumour segmentation with a bilateral 3D U-Net (MSD Task01) and autism classification from connectomes with a noise-aware linear model (ABIDE I).

Code, documentation and the interactive dashboard: https://github.com/mahdisabetkish/brainssl⁠ Dashboard: https://mahdisabetkish.github.io/brainssl/⁠

⁠Tags

⁠Use

docker pull mahdisabetkish/brainssl:cpu
docker run --rm mahdisabetkish/brainssl:cpu brainssl --help

# with a GPU and your data folder mounted
docker run --rm --gpus all -v "$PWD:/work" -w /work mahdisabetkish/brainssl:gpu brainssl prepare msd

The images hold code only. Data are downloaded with brainssl download, and the licences of the datasets (CC BY-SA 4.0 for MSD, CC BY-NC-SA for ABIDE) apply to them. Research use only, not a medical device.