mahmoudbassyouni/iculture-hmmscan-python repository overview

Description: This Docker image is developed as part of the iCulture project to ensure reproducibility in bioinformatics workflows. It is specifically designed for tasks involving protein sequence annotation using HMMER and data analysis with Python.

Tools and Versions Included: • HMMER (hmmscan): Version 3.9 A suite for protein sequence alignment and annotation using profile hidden Markov models. • SeqKit: Version 2.9 A fast and efficient toolkit for processing FASTA/Q files. • Python: Version 3.9 Included for executing data analysis scripts and visualization tasks.

Intended Use: This image is tailored for executing Python-based workflows and running HMMER for protein domain annotation. It facilitates reproducibility and ensures a consistent environment for analyses conducted under the iCulture project.

Maintainer: Mahmoud Bassyouni ([email protected]⁠)