malvikasharan/apricot_with_dependencies repository overview

APRICOT is a computational pipeline for the identification of specific functional classes of interest in large protein sets. The pipeline uses efficient sequence-based algorithms and predictive models like signature motifs of protein families for the characterization of user-provided query proteins with specific functional features. The dynamic framework of APRICOT allows the identification of unexplored functional classes of interest in large protein sets or the entire proteome.

This image is an extended version (including complete filesystems and databases) of malvikasharan/apricot, which is a docker image comprising APRICOT software and required tools (but no database).

Source code

APRICOT source codes are available on https://github.com/malvikasharan/APRICOT⁠ and https://pypi.python.org/pypi/bio-apricot⁠.

Contact

For question, troubleshooting and requests, please feel free to contact Malvika Sharan at [email protected]⁠.