markchiang/kart repository overview

⁠kart

Kart (by https://github.com/hsinnan75/Kart⁠)

⁠docker

docker run --rm -v $HOME:$HOME markchiang/kart -i BWA_INDEX_PREFIX -t 16 -f R1.clean.fastq.gz -f2 R2.clean.fastq.gz -bo output.bam

⁠singularity

singularity run docker://markchiang/kart kart -i ~/database/hg19/hg19 -t 16 -f R1.clean.fastq.gz -f2 R2.clean.fastq.gz -bo output.bam