matmu/nanopore repository overview

This image provides software for analysing Nanopore sequencing data.

Available programs:

• samtools
• minimap2
• nanopolish
• medaka
• guppy_basecaller (CPU version 3.4.5)
• guppy_aligner (CPU version 3.4.5)
• guppy_barcoder (CPU version 3.4.5)

A bgzipped Ensembl reference genome file Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz + Minimap2 index (.mmi) + fai index (.fai) is available at /opt.

A respective Singularity image is available on singularity-hub.org⁠ and can be installed with

singularity build nanopore.simg shub://matmu/nanopore:latest