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mbcebi/pprmeta

By mbcebi

Updated over 6 years ago

EBI-Metagenomics PPR-Meta docker image

0

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mbcebi/pprmeta repository overview

Dockerfile - taken from https://github.com/replikation/What_the_Phage/blob/master/phage-tool-Dockerfiles/PPR-Meta/Dockerfile

FROM ubuntu:bionic

# falls gpu vorhanden: pip install tensorflow-gpu==1.4.1  #GPU version

RUN apt install -y python2.7 python-pip git unzip wget libxt6 && \
    git clone https://github.com/zhenchengfang/PPR-Meta.git && \
    pip install -U numpy h5py tensorflow keras==2.0.8 && \
    apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

# MCR
RUN mkdir /mcr-install && \
    mkdir /opt/mcr && \
    cd /mcr-install && \
    wget http://ssd.mathworks.com/supportfiles/downloads/R2018a/deployment_files/R2018a/installers/glnxa64/MCR_R2018a_glnxa64_installer.zip && \
    cd /mcr-install && \
    unzip -q MCR_R2018a_glnxa64_installer.zip && \
    ./install -destinationFolder /opt/mcr -agreeToLicense yes -mode silent && \
    cd / && \
    rm -rf mcr-install

ENV LD_LIBRARY_PATH /opt/mcr/v94/runtime/glnxa64:/opt/mcr/v94/bin/glnxa64:/opt/mcr/v94/sys/os/glnxa64:/opt/mcr/v94/extern/bin/glnxa64

WORKDIR /PPR-Meta  

RUN chmod +x PPR_Meta

ENV PATH /PPR-Meta:$PATH

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