mcguffin/modfold4_test repository overview

The modfold4_test container has everything needed for running ModFOLD4 as well as Torque. The main ModFOLD4 script is in /home/Liam/run_ModFOLD4.sh and it is dependent on the database directory. See https://hub.docker.com/r/mcguffin/modfold4/⁠ for more info.

Instructions for just testing Torque setup (not needed for ModFOLD4 but will be for ModFOLD6 and later): sudo docker run -h torqueserver --privileged -it mcguffin/modfold4_test

NOTE: You must run the mcguffin/modfold4_test image with the --privileged flag due to Torque's requirement for unlimited ulimit settings. Thanks to agaveapi for this info: https://hub.docker.com/r/agaveapi/torque/⁠

Set the number of nodes you want to assign to torque (i.e. cores on the server) with the np=?? flag: root@torqueserver:/# echo "torqueserver np=8" > /var/spool/torque/server_priv/nodes

Start torque stuff:
root@torqueserver:/home/Liam# /etc/init.d/torque-mom start root@torqueserver:/home/Liam# /etc/init.d/torque-scheduler start root@torqueserver:/home/Liam# /etc/init.d/torque-server start

Switch user and then check it is working (qsub etc. won't run as root): root@torqueserver:/# su liam root@torqueserver:/home/Liam# qnodes -a