mfalvarez/raincloud repository overview

Command line tools: RADmeth

R packages: acepack "acepack" "/usr/local/lib/R/site-library" AnnotationDbi "AnnotationDbi" "/usr/local/lib/R/site-library" assertthat "assertthat" "/usr/local/lib/R/site-library" BH "BH" "/usr/local/lib/R/site-library" Biobase "Biobase" "/usr/local/lib/R/site-library" BiocGenerics "BiocGenerics" "/usr/local/lib/R/site-library" BiocInstaller "BiocInstaller" "/usr/local/lib/R/site-library" bsseq "bsseq" "/usr/local/lib/R/site-library" car "car" "/usr/local/lib/R/site-library" chron "chron" "/usr/local/lib/R/site-library" cluster "cluster" "/usr/local/lib/R/site-library" coda "coda" "/usr/local/lib/R/site-library" colorspace "colorspace" "/usr/local/lib/R/site-library" curl "curl" "/usr/local/lib/R/site-library" data.table "data.table" "/usr/local/lib/R/site-library" DBI "DBI" "/usr/local/lib/R/site-library" dichromat "dichromat" "/usr/local/lib/R/site-library" digest "digest" "/usr/local/lib/R/site-library" docopt "docopt" "/usr/local/lib/R/site-library" doParallel "doParallel" "/usr/local/lib/R/site-library" dplyr "dplyr" "/usr/local/lib/R/site-library" DSS "DSS" "/usr/local/lib/R/site-library" dynamicTreeCut "dynamicTreeCut" "/usr/local/lib/R/site-library" estimability "estimability" "/usr/local/lib/R/site-library" fastcluster "fastcluster" "/usr/local/lib/R/site-library" foreach "foreach" "/usr/local/lib/R/site-library" Formula "Formula" "/usr/local/lib/R/site-library" GenomeInfoDb "GenomeInfoDb" "/usr/local/lib/R/site-library" GenomicRanges "GenomicRanges" "/usr/local/lib/R/site-library" ggplot2 "ggplot2" "/usr/local/lib/R/site-library" GO.db "GO.db" "/usr/local/lib/R/site-library" gridExtra "gridExtra" "/usr/local/lib/R/site-library" gtable "gtable" "/usr/local/lib/R/site-library" gtools "gtools" "/usr/local/lib/R/site-library" Hmisc "Hmisc" "/usr/local/lib/R/site-library" hms "hms" "/usr/local/lib/R/site-library" impute "impute" "/usr/local/lib/R/site-library" IRanges "IRanges" "/usr/local/lib/R/site-library" iterators "iterators" "/usr/local/lib/R/site-library" labeling "labeling" "/usr/local/lib/R/site-library" latticeExtra "latticeExtra" "/usr/local/lib/R/site-library" lazyeval "lazyeval" "/usr/local/lib/R/site-library" limma "limma" "/usr/local/lib/R/site-library" lme4 "lme4" "/usr/local/lib/R/site-library" locfit "locfit" "/usr/local/lib/R/site-library" lsmeans "lsmeans" "/usr/local/lib/R/site-library" magrittr "magrittr" "/usr/local/lib/R/site-library" MatrixModels "MatrixModels" "/usr/local/lib/R/site-library" matrixStats "matrixStats" "/usr/local/lib/R/site-library" minqa "minqa" "/usr/local/lib/R/site-library" multcomp "multcomp" "/usr/local/lib/R/site-library" munsell "munsell" "/usr/local/lib/R/site-library" mvtnorm "mvtnorm" "/usr/local/lib/R/site-library" nloptr "nloptr" "/usr/local/lib/R/site-library" pbkrtest "pbkrtest" "/usr/local/lib/R/site-library" permute "permute" "/usr/local/lib/R/site-library" plyr "plyr" "/usr/local/lib/R/site-library" preprocessCore "preprocessCore" "/usr/local/lib/R/site-library" prettyunits "prettyunits" "/usr/local/lib/R/site-library" progress "progress" "/usr/local/lib/R/site-library" pvclust "pvclust" "/usr/local/lib/R/site-library" quantreg "quantreg" "/usr/local/lib/R/site-library" R.methodsS3 "R.methodsS3" "/usr/local/lib/R/site-library" R.oo "R.oo" "/usr/local/lib/R/site-library" R.utils "R.utils" "/usr/local/lib/R/site-library" R6 "R6" "/usr/local/lib/R/site-library" RColorBrewer "RColorBrewer" "/usr/local/lib/R/site-library" Rcpp "Rcpp" "/usr/local/lib/R/site-library" RcppEigen "RcppEigen" "/usr/local/lib/R/site-library" readr "readr" "/usr/local/lib/R/site-library" reshape2 "reshape2" "/usr/local/lib/R/site-library" RSQLite "RSQLite" "/usr/local/lib/R/site-library" S4Vectors "S4Vectors" "/usr/local/lib/R/site-library" sandwich "sandwich" "/usr/local/lib/R/site-library" scales "scales" "/usr/local/lib/R/site-library" SparseM "SparseM" "/usr/local/lib/R/site-library" stringi "stringi" "/usr/local/lib/R/site-library" stringr "stringr" "/usr/local/lib/R/site-library" SummarizedExperiment "SummarizedExperiment" "/usr/local/lib/R/site-library" TH.data "TH.data" "/usr/local/lib/R/site-library" tibble "tibble" "/usr/local/lib/R/site-library" WGCNA "WGCNA" "/usr/local/lib/R/site-library" xtable "xtable" "/usr/local/lib/R/site-library" XVector "XVector" "/usr/local/lib/R/site-library" zlibbioc "zlibbioc" "/usr/local/lib/R/site-library" zoo "zoo" "/usr/local/lib/R/site-library" littler "littler" "/usr/lib/R/site-library"
base "base" "/usr/lib/R/library"
boot "boot" "/usr/lib/R/library"
class "class" "/usr/lib/R/library"
cluster "cluster" "/usr/lib/R/library"
codetools "codetools" "/usr/lib/R/library"
compiler "compiler" "/usr/lib/R/library"
datasets "datasets" "/usr/lib/R/library"
foreign "foreign" "/usr/lib/R/library"
graphics "graphics" "/usr/lib/R/library"
grDevices "grDevices" "/usr/lib/R/library"
grid "grid" "/usr/lib/R/library"
KernSmooth "KernSmooth" "/usr/lib/R/library"
lattice "lattice" "/usr/lib/R/library"
MASS "MASS" "/usr/lib/R/library"
Matrix "Matrix" "/usr/lib/R/library"
methods "methods" "/usr/lib/R/library"
mgcv "mgcv" "/usr/lib/R/library"
nlme "nlme" "/usr/lib/R/library"
nnet "nnet" "/usr/lib/R/library"
parallel "parallel" "/usr/lib/R/library"
rpart "rpart" "/usr/lib/R/library"
spatial "spatial" "/usr/lib/R/library"
splines "splines" "/usr/lib/R/library"
stats "stats" "/usr/lib/R/library"
stats4 "stats4" "/usr/lib/R/library"
survival "survival" "/usr/lib/R/library"
tcltk "tcltk" "/usr/lib/R/library"
tools "tools" "/usr/lib/R/library"
utils "utils" "/usr/lib/R/library"