mhoeppner/metagenomic-profiling repository overview

⁠IKMB Metagenomic profiling pipeline

⁠Overview

This pipelines analyses short reads and identifies the most likely species in the respective sample.

⁠Documentation

Documentation about the pipeline can be found in the docs/ directory or under the links below:

1. What happens in this pipeline?⁠
2. Installation and configuration⁠
3. Running the pipeline⁠
4. Output⁠
5. Troubleshooting⁠