mhoeppner/wgs-calling repository overview

⁠IKMB WGS variant calling pipeline

This pipeline generates human whole-genome variant calls from short read files.

Please not that this code is not yet final!

⁠Documentation

Documentation about the pipeline can be found in the docs/ directory or under the links below:

1. What happens in this pipeline?⁠
2. Recommendations⁠
3. Installation and configuration⁠
4. Running the pipeline⁠
5. Output⁠
6. Troubleshooting⁠