micalab/ndpi2bids repository overview

⁠BIDS microscopy: ndpi

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Convert whole-slide images in .ndpi format to Brain Imaging Data Structure (BIDS) microscopy⁠ compliant datasets. https://hub.docker.com/r/micalab/ndpi2bids⁠

⁠Overview

BIDS_ndpi automates the conversion of Hamamatsu .ndpi whole-slide microscopy images into a BIDS-compliant directory structure, generating the required JSON sidecars, participants.tsv, and metadata files along the way.