microbiomedata/mg-annotation repository overview

⁠Metagnome Assembly Base Image (Work in Progress)

This is the full image to support metagenome annotation run with a WDL pipeline. It is based on the IMG annotation pipeline.

⁠Third party software used (+ their licenses)

Conda (3-clause BSD) tRNAscan-SE >= 2.0 (GNU GPL v3) Infernal 1.1.2 (BSD) CRT-CLI 1.8 (Public domain software, last official version is 1.2) Prodigal 2.6.3 (GNU GPL v3) GeneMarkS-2 >= 1.07 (Academic license for GeneMark family software) Last >= 983 (GNU GPL v3) HMMER 3.1b2 (3-clause BSD, I am using Bill's thread optimized hmmsearch) SignalP 4.1 (Academic) TMHMM 2.0 (Academic)

###Databases used (+ their licenses): Rfam (Creative Commons Zero ("CC0")) SMART (Academic) COG TIGRFAM SUPERFAMILY (Academic) Pfam (GNU Lesser General Public License) Cath-FunFam

⁠Future Work

This image is a bundled image that includes all the tools and scripts. In the future, this may be decomposed.