mitulpatel/rnaseq_tools repository overview

⁠RNA-seq anlysis toolkit

⁠Here is the list of tools contained in this toolkit:

• Trimmomatic (http://www.usadellab.org/cms/?page=trimmomatic⁠ Trimmomatic-0.36)
• GMAP (http://research-pub.gene.com/gmap/⁠ GMAP-2017-02-24)
• Tophat (https://ccb.jhu.edu/software/tophat/index.shtml⁠ Tophat-2.1.1)
• BWA (http://bio-bwa.sourceforge.net/⁠ BWA-0.7.15)
• Bowtie2 (http://bowtie-bio.sourceforge.net/bowtie2/index.shtml⁠ Bowtie2-2.3.0)
• HISAT2 (https://ccb.jhu.edu/software/hisat2/index.shtml⁠ Hisat2-2.0.5)
• STAR (https://github.com/alexdobin/STAR⁠ STAR-2.5.2b)
• SAMtools (http://samtools.sourceforge.net/⁠ SAMtools-1.3.1)