mmbirb/biobb_analysis repository overview

⁠biobb_analysis

⁠Introduction

Biobb_analysis is the Biobb module collection to perform analysis of molecular dynamics simulations. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: latest API documentation⁠.

⁠Version

v2.0.2 2019.4

⁠Installation

Using PIP:

• Installation:

    pip install "biobb_analysis>=2.0.2"
  

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• Usage: Python API documentation⁠

Using ANACONDA:

• Installation:

    conda install -c bioconda "biobb_analysis>=2.0.2"
  

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• Usage: With conda installation BioBBs can be used with the Python API documentation⁠ and the Command Line documentation⁠

Using DOCKER:

• Installation:

    docker pull mmbirb/biobb_analysis:latest
  

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• Usage:

    docker run mmbirb/biobb_analysis:latest <command>
  

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Using SINGULARITY:

• Installation:

    singularity pull shub://bioexcel/biobb_analysis
  

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• Usage:

    singularity exec bioexcel-biobb_analysis-master-latest.simg <command>
  

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The command list and specification can be found at the Command Line documentation⁠.

⁠Copyright & Licensing

This software has been developed in the MMB group⁠ at the BSC⁠ & IRB⁠ for the European BioExcel⁠, funded by the European Commission (EU H2020 823830⁠, EU H2020 675728⁠).

• (c) 2015-2019 Barcelona Supercomputing Center⁠
• (c) 2015-2019 Institute for Research in Biomedicine⁠

Licensed under the Apache License 2.0⁠, see the file LICENSE for details.