mmbirb/nucleosome-dynamics repository overview

Nucleosome Dynamics is a suite of programs for defining nucleosome architecture and dynamics from MNase-seq and ATAC-seq experiments. They are implemented as a set of R libraries and wrappers, on top of which several interfaces have been created in order to improve accessibility and usability. These interfaces include

• a MuGVRE wrapper for being accessible from https://vre.multiscalegenomics.eu⁠
• a Galaxy wrapper for being accessible from Galaxy platforms like https://dev.usegalaxy.es/⁠
• a docker and singularity containers

The present image corresponds to the docker implementation. It contains a fully functional 'Nucleosome Dynamics' R installation extended with an entrypoint script that enables a simple and easy way to interact with the set of R packages. In short, all nucleosome-related analyses can be executed as follows:

docker run mmbirb/nucleosome-dynamics [analysis] [analysis_arguments]

Check the usage container under --help option, or alternative, visit the source repository for learning more on how to run the individual analyses, the whole pipelone, etc.

⁠https://github.com/nucleosome-dynamics/docker⁠