mobilegenomes/trafic repository overview

TraFiC uses paired-end sequencing data aligned to GRCh37 (hg19) for the identification of somatic insertion of transposable elements

Pull image: docker pull mobilegenomes/trafic:multispecies

Gitlab: https://gitlab.com/mobilegenomes/TraFiC/⁠

Contact: [email protected]⁠

What citation should I use for the software TraFiC? Please use the following references:

Tubio JMC et al. Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes. Science. 2014 Aug 1;345(6196):1251343. doi: https://doi.org/10.1126/science.1251343⁠

Bernardo Rodríguez-Martín, Eva G. Alvarez, Adrian Baez-Ortega et al. Pan-cancer analysis of whole genomes reveals driver rearrangements promoted by LINE-1 retrotransposition in human tumours. bioRxiv posted August 24, 2017 doi: https://doi.org/10.1101/179705⁠