Integration of RNAseq and eCLIP data from ENCODE. An example with KHSRP.
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This is a Docker image containing all required software for a Jupyter notebook using Python, R and bash to integrate RNAseq and eCLIP data from ENCODE.
It uses an RNAseq data set of KHSRP-shRNA on K562 cells and respective shRNA-mock control. It uses as well an eCLIP data set on KHSRP.
Notebooks can be found in: https://github.com/mpg-age-bioinformatics/ENCODE_RNAseq_eCLIP.
Content type
Image
Digest
Size
1.6 GB
Last updated
almost 10 years ago
docker pull mpgagebioinformatics/encode_rnaseq_eclip