mtorresm55/archr repository overview

docker run -it 2c2ad89f487d /bin/bash

apt-get update

apt install build-essential

apt-get install libboost-dev

apt-get install libcairo2-dev

apt-get -y install gsl-bin

docker commit 31756b01ec7a mtorresm55/archr:v1.0

docker run -it dcac6730c277 /bin/bash

mamba install -c conda-forge -c bioconda r-devtools macs2 r-biocmanager bioconductor-zlibbioc bioconductor-iranges bioconductor-s4vectors bioconductor-biocgenerics bioconductor-genomeinfodbdata r-codetools r-iterators r-foreach r-cluster r-globaloptions r-rjson r-colorspace r-shape r-formatr r-futile.options r-lambda.r r-bh r-snow r-futile.logger bioconductor-genomeinfodb bioconductor-xvector r-viridislite r-rcolorbrewer r-munsell r-labeling r-farver r-lattice r-matrix r-nlme r-scales r-mgcv r-mass r-isoband r-gtable r-sitmo r-abind bioconductor-sparsearray bioconductor-delayedarray bioconductor-s4arrays bioconductor-biobase bioconductor-matrixgenerics bioconductor-summarizedexperiment r-restfulr bioconductor-genomicalignments r-rcurl r-xml bioconductor-rhtslib bioconductor-biocparallel r-bitops bioconductor-rsamtools r-matrixstats bioconductor-rtracklayer bioconductor-biocio bioconductor-biostrings bioconductor-genomicranges r-lazyeval r-crosstalk r-curl r-tidyselect r-generics r-data.table r-dplyr r-tidyr r-ggplot2 r-progress r-plyr r-tzdb r-vroom r-hms r-r.methodss3 r-r.oo r-pracma r-png r-bit bioconductor-annotationdbi r-plogr r-blob r-bit64 bioconductor-keggrest r-r.utils bioconductor-go.db bioconductor-annotate r-powerlaw r-reshape2 r-readr r-tfmpvalue bioconductor-seqlogo r-rsQlite r-dbi r-gtools bioconductor-dirichletmultinomial bioconductor-cner r-catools bioconductor-bsgenome r-rcppeigen bioconductor-rhdf5lib r-doparallel r-clue r-getoptlong r-circlize r-dqrng r-rcppprogress r-irlba r-rcppannoy r-fnn r-rcpparmadillo r-rtsne r-dt r-plotly bioconductor-tfbstools r-nabor bioconductor-rhdf5filters bioconductor-complexheatmap r-gridextra r-ggrepel r-uwot bioconductor-chromvar bioconductor-motifmatchr bioconductor-rhdf5

devtools::install_github("GreenleafLab/ArchR", ref="master", repos = BiocManager::repositories())

docker commit 8777d0ad3d9f mtorresm55/archr:v1.1

docker run -it ee1915432e36 /bin/bash

install.packages("Cairo")

docker commit 4aa74372b2e0 mtorresm55/archr:v1.2

docker push mtorresm55/archr:v1.2