container for qc-plots with R from qcML and mzQC
10K+
docker run -it -v </path/to/input.qcML>:</home/OpenMSuser/target.qcML>:ro -v /tmp/:/tmp/:rw -w /tmp/ mwalzer/qc_plotter:v0.1 qc_plot.sh -<metric> </home/OpenMSuser/target.qcML>
e.g.:
docker run -it -v /home/walzer/ms-tools/iPRG/qc/JD_06232014_sample1_A.qcML:/home/OpenMSuser/test.qcML:ro -v /tmp/:/tmp/:rw -w /tmp/ mwalzer/qc_plotter:v0.1 qc_plot.sh -fracmass /home/OpenMSuser/test.qcML
### currently available trough plotter script:
* "-auctic"
* "-charge_histogram"
* "-dppm"
* "-dppm_time"
* "-dppm_percentiles"
* "-esiinstability"
* "-fracmass"
* "-gravy"
* "-idmap"
* "-id_oversampling"
* "-lengthdistro"
* "-ms1peakcount"
* "-ms1sn"
* "-ms2peakcount"
* "-ms2sn"
* "-repeatid"
* "-rt_events"
* "-sn"
* "-tic"
* "-ticric"
* "-topn"
* "-chargehistogramidfree"
Content type
Image
Digest
Size
539.6 MB
Last updated
about 7 years ago
docker pull mwalzer/qc-plotter