mziemann/gmea repository overview

In bioinformatics, different versions of software dependencies and packages can cause slight variations in outputs when workflows are executed on different systems. Here we provide a stable docker based environment to conduct our method evaluation and analysis work. Our work focuses on the development of a functional enrichment technique for Infinium methylation data. The code repository is located on github (https://github.com/markziemann/gmea⁠). You can use this repository to reproduce our work or write your own custom enrichment analysis workflow without needing to install the big stack of R packages. If you are interested in reproduction, be sure to run "git pull" in the gmea folder so that you are using the latest version of our analysis scripts.