Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data
911
Here is the contents of the Dockerfile:
FROM bioconductor/bioconductor_docker:RELEASE_3_14
Update apt-get
RUN apt-get update \
&& apt-get install -y nano git libncurses-dev \
## Install the python package magic wormhole to send files
&& pip install magic-wormhole \
## Remove packages in '/var/cache/' and 'var/lib'
## to remove side-effects of apt-get update
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/*
Install required CRAN packages
RUN R -e 'install.packages(c("WGCNA","RColorBrewer","matrixStats","gplots","reshape2","ggplot2","kableExtra","vioplot","eulerr"))'
Install required Bioconductor package
RUN R -e 'BiocManager::install(c("missMethyl","limma","minfi","IlluminaHumanMethylation450kanno.ilmn12.hg19","IlluminaHumanMethylationEPICanno.ilm10b2.hg19", "ruv", "FlowSorted.Blood.450k", "DMRcate", "FlowSorted.Blood.EPIC", "mitch"))'
Set the container working directory
ENV DIRPATH /analysis
WORKDIR $DIRPATH
Content type
Image
Digest
sha256:a19380cb8…
Size
2.9 GB
Last updated
over 3 years ago
docker pull mziemann/meth_analysis