mzlabresearch/smintegration repository overview

⁠SMIntegration: Spatial Multi-omics Integration Platform

SMIntegration is a comprehensive Dockerized platform for integrated analysis of spatial transcriptomics and metabolomics data. This innovative open-source solution provides a unified workflow that seamlessly combines:

• Spatial Pattern Recognition - Identify meaningful spatial distributions across multi-omic datasets

• Differential Comparison - Compare gene and metabolite expression across tissue regions

• Network Construction - Build integrative networks revealing gene-metabolite interactions

• Functional Annotation - Annotate discovered patterns with biological context

⁠How to use

# Pull the latest Docker image
docker pull mzlabresearch/smintegration:v-1.0

# Run with ShinyProxy
docker run -d -p 8787:3838  mzlabresearch/smintegration:v-1.0

Please use a web browser to access: http://localhost:8787⁠