nbisweden/gew-seqprep repository overview

⁠Genome erosion workflow for historical and modern samples

GitHub repository for snakemake workflow to analyze whole-genome sequencing data from historical and modern samples, to study patterns of genome erosion.

The full workflow documentation can be found here:

https://github.com/NBISweden/L_Dalen_1709/wiki⁠

⁠Note of acknowledgements

This workflow makes use of a customised version of the original SeqPrep modified by Swapan Mallik. For additional information refere to: Palkopoulou et al. Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth. Curr Biol 25(10): P1395-1400. 2015⁠

⁠Licence information

Genome erosion workflow

Copyright (C) 2020 Verena Kutschera

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/⁠.