neuralensemble/analysis repository overview

⁠Neuroscience data analysis with Python

⁠What it gives you

• shell environment with Neo (development version) and Elephant installed.
• IPython, scipy, matplotlib and OpenMPI are also installed.
• use directly or as a base for your own project-specific Docker images.

More analysis tools will be added in future releases, coming soon!

⁠Basic use

The following command starts a container with the bash shell, running as user docker.

docker run -i -t neuralensemble/analysis /bin/bash

You should then activate the "neurosci" virtual environment:

source ~/env/neurosci/bin/activate

after which you can run ....

Note that this image does not provide an X11 graphical environment, so GUI tools will not work; use the neuralensemble/analysisx image if you need X11.

⁠Documentation

For documentation of the tools installed in the image, see http://neuralensemble.org/projects/⁠