neuropathologiebasel/cqall_plotter repository overview

CQall_plotter is a Python tool that aggregates CNV segment data generated by CQcalc [https://github.com/neuropathbasel-pub/CQcalc⁠] from multiple samples within an annotated cohort and generates interactive summary plots of chromosomal gain/loss ratios using Plotly. It computes disjoint intervals per chromosome, supports array type-specific and probe-intersected analyses, and stores the output plots as compressed JSON files. This component is part of the CnQuant suite [https://github.com/neuropathbasel-pub/CnQuant⁠] for Illumina Infinium Methylation array-based CNV visualization, building on Mepylome [https://github.com/brj0/mepylome⁠].

For full details, visit our GitHub repositories https://github.com/neuropathbasel-pub/CnQuant⁠ and https://github.com/neuropathbasel-pub/CQall_plotter⁠