The VCPA is SNP/Indel Variant Calling Pipeline.
3.6K
The VCPA is SNP/Indel Variant Calling Pipeline for analysis of whole genome and exome sequencing (WGS/WES) for the Alzheimer’s Disease Sequencing Project.
Please mount your reference data to "/mnt/data/NGS/ref/hg38" Please mount your sample data to "/mnt/adsp/bam"
docker pull niagads/vcpa:java8sgeversion6
docker run --cpus 8 -it --rm -d --mount type=bind,source="$(pwd)"/ref/hg38,destination="/mnt/data/NGS/ref/hg38",consistency=cached --mount type=bind,source=$(pwd)"/giab/bam,destination="/mnt/adsp/bam",consistency=cached niagads/vcpa:java8sgeversion6 login -f sgeadmin
Content type
Image
Digest
Size
1 GB
Last updated
about 8 years ago
docker pull niagads/vcpa