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number25/gtf2db_iso

By number25

•Updated about 1 year ago

Converts a GTF/GFF annotation file to a DB file, IsoQuant software https://ablab.github.io/IsoQuant/

Image
Data science
0

133

number25/gtf2db_iso repository overview

Converts a GTF/GFF annotation file to a DB file that is then used in the IsoQuant software. See documentation here https://ablab.github.io/IsoQuant/⁠

Run as such;

docker run \
    -v </path/to/annotation.gtf>:/opt/venv/data/annotation.gtf \
    -v $(pwd):/opt/venv/data \
    number25/gtf2bed_iso:3.7.1 gtf2db.py \
    -i /opt/venv/data/annotation.gtf \
    --complete_genedb \
    -o /opt/venv/data/annotation.db

The database file can then be provided to IsoQuant in place of the conventional annotation GTF/GFF.

Tag summary

Content type

Image

Digest

sha256:e5803986e…

Size

30.3 MB

Last updated

about 1 year ago

docker pull number25/gtf2db_iso:3.7.1