ocroci/chrokit repository overview

⁠Using Docker

Follow the instructions on gitHub (https://github.com/ocroci/ChroKit⁠) for Mac OS, Linux and Windows operating systems.

⁠Using Singularity

1. From terminal, pull the image from DockerHub:

singularity pull chrokit_server.img docker://ocroci/chrokit:<tag>

1. execute:

singularity run -B <directory> chrokit_server.img

where <directory> is the directory to be bound with the container

To access the program, use <IP>:6060, where:

• <IP> is the IP address of the machine in which singularity image had been run
• 6060 is the port the container is listening to

Pre-loaded genesets for gene ontology analyses were downloaded from MSigDB v.7.4 (copyright (c) 2004-2020 Broad Institute, Inc., Massachusetts Institute of Technology, and Regents of the University of California) (http://www.gsea-msigdb.org/gsea/downloads.jsp⁠) and are under Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/legalcode⁠)