omicsclass/isoseq3 repository overview

$ docker search omicsclass
INDEX       NAME                                     DESCRIPTION                           STARS     OFFICIAL   AUTOMATED
docker.io   docker.io/omicsclass/biocontainer-base   Biocontainers base Image              0
docker.io   docker.io/omicsclass/bwa                 BWA v0.7.17 build by omicsclass       0
docker.io   docker.io/omicsclass/isoseq3             isoseq3 v3.3.0 build by omicsclass    0
docker.io   docker.io/omicsclass/samtools            samtools v1.10 build by omicsclass    0

docker pull docker.io/omicsclass/isoseq3:latest

$ docker run -v /data:/work --rm   omicsclass/isoseq3:latest ccs movie.subreads.bam movie.ccs.bam --min-rq 0.9
$ docker run -v /data:/work --rm   omicsclass/isoseq3:latest lima --isoseq --dump-clips --no-pbi --peek-guess -j 24 ccs.bam primers.fasta demux.bam 
$ docker run -v /data:/work --rm   omicsclass/isoseq3:latest isoseq3 refine --require-polya demux.P5--P3.bam barcodes.fasta flnc.bam
$ docker run -v /data:/work --rm   omicsclass/isoseq3:latest isoseq3 cluster flnc.bam polished.bam --verbose --use-qvs