omicsclass/r-server repository overview

⁠说明：

本镜像安装了Rstudio-server 及R，以及很多生物信息数据分析相关的R包，如果有R包安装不成功可以使用此镜像，有问题可以到：www.omicsclass.com⁠ 提问。

⁠使用：

使用方法, 运行命令：

docker run --rm -v D:\data:/work -w /work  -d --privileged -p 8787:8787 omicsclass/r-server:latest

容器启动之后，浏览器打开: http://localhost:8787/⁠

⁠安装的R包及版本，还在不断更新中：

survivalROC "1.0.3" abind "1.4-5" ade4 "1.7-16" admisc "0.12" affy "1.68.0" affyio "1.60.0" agricolae "1.3-3" airway "1.10.0" AlgDesign "1.2.0" ALL "1.32.0" annotate "1.68.0" AnnotationDbi "1.52.0" AnnotationFilter "1.14.0" ape "5.5" argparse "2.0.3" arm "1.11-2" askpass "1.1" assertthat "0.2.1" backports "1.2.1" base "4.0.3" base64 "2.0" base64enc "0.1-3" bayesm "3.1-4" beanplot "1.2" bench "1.1.1" BH "1.75.0-0" Biobase "2.50.0" BiocFileCache "1.14.0" BiocGenerics "0.36.0" BiocManager "1.30.15" BiocParallel "1.24.1" BiocStyle "2.18.1" BiocVersion "3.12.0" biomaRt "2.46.3" Biostrings "2.58.0" bit "4.0.4" bit64 "4.0.5" bitops "1.0-6" blob "1.2.1" bookdown "0.22" boot "1.3-25" brew "1.0-6" brio "1.1.0" broom "0.7.6" bslib "0.2.5" bumphunter "1.32.0" cachem "1.0.4" callr "3.7.0" car "3.0-10" carData "3.0-4" caret "6.0-88" caTools "1.18.2" ccaPP "0.3.3" ccdrAlgorithm "0.0.5" cellranger "1.1.0" checkmate "2.0.0" chron "2.3-56" CircStats "0.2-6" class "7.3-17" classInt "0.4-3" cli "2.5.0" clipr "0.7.1" clisymbols "1.2.0" clue "0.3-59" cluster "2.1.0" clusterCrit "1.2.8" clusterProfiler "3.18.1" clValid "0.7" cmapR "1.2.1" coda "0.19-4" codetools "0.2-16" colorspace "2.0-0" combinat "0.0-8" commonmark "1.7" compiler "4.0.3" compositions "2.0-1" conquer "1.0.2" ConsensusClusterPlus "1.54.0" corpcor "1.6.9" corrplot "0.88" covr "3.5.1" cowplot "1.1.1" cpp11 "0.2.7" crayon "1.4.1" credentials "1.3.0" crosstalk "1.1.1" curl "4.3" cyclocomp "1.1.0" cytolib "2.2.1" data.table "1.14.0" data.tree "1.0.0" datasets "4.0.3" DBI "1.1.0" dbplyr "2.1.1" DelayedArray "0.16.2" deldir "0.2-10" dendextend "1.15.1" DEoptimR "1.0-8" desc "1.3.0" DESeq2 "1.30.1" devtools "2.4.1" diceR "1.0.3" diffobj "0.3.2" digest "0.6.27" discretecdAlgorithm "0.0.7" DO.db "2.9" doParallel "1.0.16" doRNG "1.8.2" DOSE "3.16.0" doSNOW "1.0.19" dotCall64 "1.0-1" downlit "0.2.1" downloader "0.4" dplyr "1.0.6" dqrng "0.3.0" DT "0.18" dtplyr "1.1.0" dtw "1.22-3" dygraphs "1.1.1.6" dynamicTreeCut "1.63-1" DynDoc "1.68.0" e1071 "1.7-6" edgeR "3.32.1" ellipse "0.4.2" ellipsis "0.3.1" enrichplot "1.10.2" EnsDb.Hsapiens.v86 "2.99.0" ensembldb "2.14.1" EPIC "1.1.5" estimate "1.0.13" evaluate "0.14" exactRankTests "0.8-32" factoextra "1.0.7" FactoMineR "2.4" fansi "0.4.1" farver "2.0.3" fastcluster "1.1.25" fastmap "1.1.0" fastmatch "1.1-0" FDb.InfiniumMethylation.hg19 "2.2.0" fgsea "1.16.0" fields "11.6" findpython "1.0.7" fitdistrplus "1.1-3" flashClust "1.01-2" flexclust "1.4-0" flowCore "2.2.0" FNN "1.1.3" foghorn "1.4.0" fontBitstreamVera "0.1.1" fontLiberation "0.1.0" fontquiver "0.2.1" forcats "0.5.1" foreach "1.5.1" foreign "0.8-80" formatR "1.7" Formula "1.2-4" fs "1.5.0" futile.logger "1.4.3" futile.options "1.0.1" future "1.21.0" future.apply "1.7.0" gargle "1.1.0" gdtools "0.2.3" genefilter "1.72.1" geneplotter "1.68.0" generics "0.1.0" GenomeInfoDb "1.26.2" GenomeInfoDbData "1.2.4" GenomicAlignments "1.26.0" GenomicFeatures "1.42.2" GenomicRanges "1.42.0" GEOquery "2.58.0" gert "1.3.0" getopt "1.20.3" GGally "2.1.1" ggforce "0.3.3" ggplot2 "3.3.3" ggplot2movies "0.0.1" ggpubr "0.4.0" ggraph "2.0.5" ggrepel "0.9.1" ggridges "0.5.3" ggsci "2.9" ggsignif "0.6.1" ggtern "3.3.0" ggtext "0.1.1" gh "1.3.0" gitcreds "0.1.1" glmnet "4.1-1" glmSparseNet "1.8.1" globals "0.14.0" glue "1.4.2" gmailr "1.0.0" GO.db "3.12.1" goftest "1.2-2" googledrive "1.0.1" googlesheets4 "0.3.0" GOSemSim "2.16.1" gower "0.2.2" gplots "3.1.1" graph "1.68.0" graphics "4.0.3" graphlayouts "0.7.1" grDevices "4.0.3" grid "4.0.3" gridBase "0.4-7" gridExtra "2.3" gridGraphics "0.5-1" gridSVG "1.7-2" gridtext "0.1.4" GSEABase "1.52.1" gsubfn "0.7" GSVA "1.38.2" gtable "0.3.0" gtools "3.8.2" hash "2.2.6.1" haven "2.3.1" hdnom "6.0.0" hexbin "1.28.2" highr "0.8" Hmisc "4.5-0" hms "1.0.0" htmlTable "2.1.0" htmltools "0.5.1.1" htmlwidgets "1.5.3" httpuv "1.6.1" httr "1.4.2" hunspell "3.0.1" ica "1.0-2" ids "1.0.1" igraph "1.2.6" illuminaio "0.32.0" immunedeconv "2.0.4" impute "1.64.0" infotheo "1.2.0" ini "0.3.1" ipred "0.9-11" IRanges "2.24.1" irlba "2.3.3" isoband "0.2.3" iterators "1.0.13" jpeg "0.1-8.1" jquerylib "0.1.4" jsonlite "1.7.2" KEGGgraph "1.50.0" KEGGREST "1.30.1" KernSmooth "2.23-17" klaR "0.6-15" km.ci "0.5-2" KMsurv "0.1-5" knitr "1.33" labeling "0.4.2" labelled "2.8.0" Lahman "9.0-0" lambda.r "1.2.4" later "1.2.0" latex2exp "0.5.0" lattice "0.20-41" latticeExtra "0.6-29" lava "1.6.9" lazyeval "0.2.2" leaps "3.1" leiden "0.3.7" lifecycle "1.0.0" limma "3.46.0" limSolve "1.5.6" lintr "2.0.1" listenv "0.8.0" lme4 "1.1-26" lmtest "0.9-38" lobstr "1.1.1" locfit "1.5-9.4" loose.rock "1.2.0" lpSolve "5.6.15" lubridate "1.7.10" M3C "1.12.0" maftools "2.6.05" magrittr "2.0.1" mapproj "1.2.7" maps "3.3.0" maptools "1.1-1" markdown "1.1" maSigPro "1.62.0" MASS "7.3-53" Matrix "1.3-3" matrixcalc "1.0-3" MatrixGenerics "1.2.1" MatrixModels "0.5-0" matrixStats "0.58.0" maxstat "0.7-25" mclust "5.4.7" MCPcounter "1.2.0" memoise "2.0.0" methods "4.0.3" Mfuzz "2.50.0" mgcv "1.8-33" microbenchmark "1.4-7" mime "0.9" miniUI "0.1.1.1" minqa "1.2.4" mockery "0.4.2" ModelMetrics "1.2.2.2" modelr "0.1.8" modeltools "0.2-23" multcomp "1.4-17" MultiAssayExperiment "1.16.0" multtest "2.46.0" munsell "0.5.0" mvtnorm "1.1-1" NbClust "3.0" ncvreg "3.13.0" nleqslv "3.3.2" nlme "3.1-149" nloptr "1.2.2.2" NMF "0.23.0" nnet "7.3-14" nor1mix "1.3-0" numDeriv "2016.8-1.1" nycflights13 "1.0.2" openssl "1.4.3" openxlsx "4.2.3" optparse "1.6.6" org.Hs.eg.db "3.12.0" packrat "0.6.0" pacman "0.5.1" parallel "4.0.3" parallelly "1.25.0" parsedate "1.2.1" PASWR "1.1" patchwork "1.1.1" pathview "1.30.1" pbapply "1.4-3" pbkrtest "0.5.1" pcaPP "1.9-74" penalized "0.9-51" permute "0.9-5" pheatmap "1.0.12" pillar "1.6.0" pingr "2.0.1" pixmap "0.4-12" pkgbuild "1.2.0" pkgconfig "2.0.3" pkgload "1.2.1" pkgmaker "0.32.2" plogr "0.2.0" plotly "4.9.3" plotrix "3.8-1" plotROC "2.2.1" plyr "1.8.6" png "0.1-7" polspline "1.1.19" polyclip "1.10-0" polynom "1.4-0" pracma "2.3.3" praise "1.0.0" preprocessCore "1.52.1" prettyunits "1.1.1" pROC "1.17.0.1" processx "3.5.2" prodlim "2019.11.13" profmem "0.6.0" profvis "0.3.7" progress "1.2.2" promises "1.2.0.1" ProtGenerics "1.22.0" proto "1.0.0" proxy "0.4-25" ps "1.5.0" purrr "0.3.4" quadprog "1.5-8" quantreg "5.85" questionr "0.7.4" qvalue "2.22.0" R.cache "0.15.0" R.methodsS3 "1.8.1" R.oo "1.24.0" R.utils "2.10.1" R6 "2.5.0" randomForest "4.6-14" RankAggreg "0.6.6" RANN "2.6.1" rappdirs "0.3.3" rcmdcheck "1.3.3" RColorBrewer "1.1-2" Rcpp "1.0.6" RcppAnnoy "0.0.18" RcppArmadillo "0.10.2.1.0" RcppEigen "0.3.3.9.1" RcppParallel "5.1.4" RcppProgress "0.4.2" RCurl "1.98-1.2" readr "1.4.0" readxl "1.3.1" recipes "0.1.16" registry "0.5-1" RegParallel "1.8.0" rematch "1.0.1" rematch2 "2.1.2" remotes "2.3.0" reprex "2.0.0" reshape "0.8.8" reshape2 "1.4.4" reticulate "1.20" rex "1.2.0" Rgraphviz "2.34.0" rhdf5 "2.34.0" rhdf5filters "1.2.1" Rhdf5lib "1.13.0-1" Rhtslib "1.22.0" rhub "1.1.1" rio "0.5.26" RJSONIO "1.3-1.4" rlang "0.4.10" rlist "0.4.6.1" rmarkdown "2.8" rms "6.2-0" RMySQL "0.10.21" rngtools "1.5" robustbase "0.93-7" ROCR "1.0-11" Rook "1.1-1" roxygen2 "7.1.1" rpart "4.1-15" rprojroot "2.0.2" RProtoBufLib "2.2.0" Rsamtools "2.6.0" rsconnect "0.8.17" RSpectra "0.16-0" RSQLite "2.2.3" rstatix "0.7.0" rstudioapi "0.13" rtracklayer "1.50.0" Rtsne "0.15" rvcheck "0.1.8" rversions "2.0.2" rvest "1.0.0" S4Vectors "0.28.1" sandwich "3.0-0" sass "0.4.0" scales "1.1.1" scattermore "0.7" scatterpie "0.1.6" scatterplot3d "0.3-41" scrime "1.3.5" sctransform "0.3.2" selectr "0.4-2" sessioninfo "1.1.1" Seurat "4.0.2" SeuratObject "4.0.1" shadowtext "0.0.8" shape "1.4.5" shiny "1.6.0" siggenes "1.64.0" sitmo "2.0.1" snow "0.4-3" sourcetools "0.1.7" sp "1.4-5" spam "2.6-0" sparsebn "0.1.2" sparsebnUtils "0.0.8" SparseM "1.81" sparseMatrixStats "1.2.1" spatial "7.3-12" spatstat.core "2.1-2" spatstat.data "2.1-0" spatstat.geom "2.1-0" spatstat.sparse "2.0-0" spatstat.utils "2.1-0" spelling "2.2" splines "4.0.3" sqldf "0.4-11" SQUAREM "2021.1" statmod "1.4.36" stats "4.0.3" stats4 "4.0.3" STRINGdb "2.2.2" stringi "1.5.3" stringr "1.4.0" styler "1.4.1" SummarizedExperiment "1.20.0" survAUC "1.0-5" survival "3.2-7" survivalROC "1.0.3" survminer "0.4.9" survMisc "0.5.5" sva "3.38.0" svglite "2.0.0" sys "3.4" systemfonts "1.0.2" TCGAbiolinks "2.18.0" TCGAbiolinksGUI.data "1.10.0" tcltk "4.0.3" tensor "1.5" tensorA "0.36.2" testit "0.13" testthat "3.0.2" TH.data "1.0-10" tibble "3.1.1" tidygraph "1.2.0" tidyr "1.1.3" tidyselect "1.1.0" tidyverse "1.3.1" timeDate "3043.102" tinytest "1.2.4" tinytex "0.31" tkWidgets "1.68.0" tools "4.0.3" topGO "2.42.0" tsne "0.1-3" tufte "0.9" tweenr "1.0.2" TxDb.Hsapiens.UCSC.hg19.knownGene "3.2.2" umap "0.2.7.0" usethis "2.0.1" utf8 "1.1.4" utils "4.0.3" uuid "0.1-4" uwot "0.1.10" vctrs "0.3.6" vegan "2.5-7" venn "1.10" VennDiagram "1.6.20" verification "1.42" viridis "0.5.1" viridisLite "0.3.0" waldo "0.2.5" webutils "1.1" WGCNA "1.70-3" whisker "0.4" whoami "1.3.0" widgetTools "1.68.0" withr "2.4.2" xCell "1.1.0" xfun "0.22" XML "3.99-0.5" xml2 "1.3.2" xmlparsedata "1.0.5" xopen "1.0.0" xtable "1.8-4" xts "0.12.1" XVector "0.30.0" yaml "2.2.1" yardstick "0.0.8" zip "2.1.1" zlibbioc "1.36.0" zoo "1.8-9"