omicsclass/samtools repository overview

$ docker search omicsclass
INDEX       NAME                                     DESCRIPTION                     STARS     OFFICIAL   AUTOMATED
docker.io   docker.io/omicsclass/biocontainer-base   Biocontainers base Image        0
docker.io   docker.io/omicsclass/samtools            samtools 1.10 from omicsclass   0

docker pull docker.io/omicsclass/samtools:latest

$ ll
-rw-rw-r-- 1 biosoft biosoft   70 Mar 16 17:30 t.fa
$ pwd
/biosoft/docker/samtools
$ docker run -v /biosoft/docker/samtools:/work --rm   omicsclass/samtools:latest samtools faidx t.fa
$ ll
total 24
-rw-rw-r-- 1 biosoft biosoft   70 Mar 16 17:30 t.fa
-rw-r--r-- 1 root    root      14 Mar 16 17:55 t.fa.fai