pegi3s/alerax repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the usage of AleRax⁠, a species tree inference and reconciliation tool.

⁠Using the AleRax image in Linux

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/alerax -f /data/families.txt -s /data/species_tree.nwk -p /data/output

In this command, you should replace:

• /your/data/dir to point to the directory that contains the input file(s).
• families.txt to the actual name of your families file, which describes the gene trees (or alignments) of each gene family.
• species_tree.nwk to the actual name of your starting species tree file (or Random).
• output to the actual name of the output directory.

To see the AleRax⁠ help, just run docker run --rm pegi3s/alerax --help.