pegi3s/clustalomega repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the usage of Clustal Omega⁠, a sequence alignment tool.

⁠Using the Clustal Omega image in Linux

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/clustalomega -i /data/sequences.fasta -o /data/sequences_aligned.fasta

In this command, you should replace:

• /your/data/dir to point to the directory that contains the FASTA file you want to align.
• sequences.fasta to the actual name of your FASTA file.
• sequences_aligned.fasta to the actual name of your aligned FASTA file.

To see the Clustal Omega⁠ help, just run docker run --rm pegi3s/clustalomega --help.