pegi3s/coral repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

⁠Using the Coral image in Linux

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/coral -f /data/input.fasta -o /data/output.fasta

In this command, you should replace:

• /your/data/dir to point to the directory that contains the input files you want to analyze.
• input.fasta to the actual name of your input file.

Note that the -f parameter indicates that the input file is in FASTA format. You should use -fq for standard FASTQ files and -fs for Solexa FASTA files.

To see the Coral⁠ help, just run docker run --rm pegi3s/coral.