pegi3s/flash repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

⁠Using the FLASH image in Linux

You should adapt and run the following commands:

• Interleaved paired-end FASTQ file: docker run --rm -v /your/data/dir:/data pegi3s/flash --interleaved-input /data/input.fastq -d /data/result
• Paired-end FASTQ files: docker run --rm -v /your/data/dir:/data pegi3s/flash /data/input_1.fastq /data/input_2.fastq -d /data/result

In this command, you should replace:

• /your/data/dir to point to the directory that contains the input file you want to process.
• input.fastq (or input_1.fastq and input_2.fastq) to the actual name of your input file.
• result to the actual name of the directory to store FLASH results.

To see the FLASH⁠ help, just run docker run --rm pegi3s/flash --help.