pegi3s/format_auto-pss-genome repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the preparation of tar.gz file(s) from the project folders generated by auto-pss-genome (see pegi3s/auto-pss-genome) for submission to the B+ database⁠.

⁠Using the format_auto-pss-genome image in Linux

You should adapt and run the following command: docker run --rm -v /var/run/docker.sock:/var/run/docker.sock -v /your/data/dir:/data pegi3s/format_auto-pss-genome /opt/bpos_option /your/data/dir

In this command, you should replace:

• /your/data/dir to point to the working directory where the "ipssa_project" folder and the "ipssa-project.params" are located (appears twice).
• bpos_option to either bpos_codeml.sh, bpos_fubar.sh or bpos_omegamap.sh depending on whether you want to prepare codeML, FUBAR or Omegamap projects for submission to B+.

Depending on the selected option a folder named either codeml_projects, fubar_projects or omegamap_projects will be created, containing the tar.gz file(s) ready to be submitted to B+.