pegi3s/generax repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the usage of GeneRax⁠, a gene and species tree inference tool.

⁠Using the GeneRax image in Linux

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/generax -f /data/families.txt -s /data/species_tree.nwk -p /data/output --rec-model UndatedDL --strategy EVAL

In this command, you should replace:

• /your/data/dir to point to the directory that contains the input file(s).
• families.txt to the actual name of your families file.
• species_tree.nwk to the actual name of your starting species tree file.
• output to the actual name of the output directory.

To see the GeneRax⁠ help, just run docker run --rm pegi3s/generax --help.