pegi3s/haplogrep repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the usage of Haplogrep⁠, a fast and free haplogroup classification tool.

⁠Using the Haplogrep image in Linux

You should adapt and run the following command:

docker run --rm -v /your/data/dir:/data pegi3s/haplogrep classify --input=/data/input [email protected] --out data/out.txt

In this command you should replace:

• /your/data/dir to point to the directory that contains the input file you want to analyze.

• input to the actual name of your input file.

• out.txt to the desired name of the output file.

• You may also want to replace [email protected] for another reference sequence.

To see the haplogrep usage, just run docker run --rm pegi3s/haplogrep (with no arguments).