pegi3s/htseq
HTSeq (https://htseq.readthedocs.io/en/latest/) Docker image.
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This image facilitates the usage of HTSeq, a Python package for analysis of high-throughput sequencing data.
You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/htseq <script-name> [script arguments]
In this command, you should replace:
/your/data/dir
to point to the directory that contains the FASTA file you want to align.<script-name>
to the actual name of the script to be executed (e.g. htseq-qa
or htseq-count
.[script arguments]
with the argumetns required by the script.Please note that data must be under the same drive than the Docker Toolbox installation (usually C:
) and in a folder with write permissions (e.g. C:/Users/User_name/
).
You should adapt and run the following command: docker run --rm -v "/c/Users/User_name/dir/":/data pegi3s/htseq <script-name> [script arguments]
docker pull pegi3s/htseq