pegi3s/igv repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

⁠Using the IGV image in Linux

Please note that the following instructions must be executed in Linux environments only.

You should adapt and run the following command: docker run --rm -ti -e USERID=$UID -e USER=$USER -e DISPLAY=$DISPLAY -v /var/db:/var/db:Z -v /tmp/.X11-unix:/tmp/.X11-unix -v $HOME/.Xauthority:/home/developer/.Xauthority --device /dev/dri/ -v "/your/data/dir:/data" pegi3s/igv

If the above command fails, try running xhost + first. In this command, you should replace:

• /your/data/dir to point to the directory that you want to have available at IGV.

Running this command opens the IGV⁠ Graphical User Interface. Your data directory will be available through the file browser at /data.