pegi3s/prank-msa repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the usage of PRANK⁠, a probabilistic multiple alignment program for DNA, codon and amino-acid sequences.

⁠Using the PRANK image in Linux

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/prank-msa -d=/data/fastaFile -o=/data/output/output -F

In this command, you should replace:

• /your/data/dir to point to the directory that contains the input file(s).
• fastaFile to the actual name of your input FASTA file.
• output to the desired prefix for the output files (output.best.fas will be created).

To see the PRANK⁠ help, just run docker run --rm pegi3s/prank-msa -help.