pegi3s/r_edger repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image allows the usage of the edgeR⁠ Bioconductor package, a software tool for differential gene expression analysis based on the negative binomial distribution.

⁠Using the R Project image in Linux

You should adapt and run the following command: docker run --rm -it -v /your/data/dir:/data pegi3s/r_edger Rscript /data/script.R

In this command, you should replace:

• /your/data/dir to point to the directory that contains the input files you want to analyze and the R script to be executed.
• script.R to the actual name of your script using EdgeR (i.e. containing library("edgeR")).