pegi3s/scriber repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the usage of scriber⁠, This image facilitates the usage of scriber, SCRIBER predicts protein-binding residues from a protein structure and chain.

⁠Using the scriber image in Linux

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/scriber /data/input.pdb A --output /data/scriber_results.csv

In this command, you should replace:

• /your/data/dir to point to the directory that contains the input PDB file
• input.pdb to the actual name of your input protein structure file in PDB format (the declared chain must be A).
• scriber_results.csv to the actual name of your SCRIBER prediction CSV file. A second simplified file named output.scriber.interface_residues.csv will also be generated.