penacastillolab/python38env repository overview

Python 3.8.11 with the following modules installed: pickle, biopython, pprint, scikit-bio, itertools, scikit-learn, pandas, numpy, shap and pyCeterisParibus.

It also contains our machine learning models to predict bacterial sRNA and the interaction probability of a sRNA and a mRNA.

Contains all the requirements to run sRNARFTarget https://github.com/BioinformaticsLabAtMUN/sRNARFTarget⁠ and sRNARanking https://github.com/BioinformaticsLabAtMUN/sRNARanking⁠