phytooracle/psii_segmentation repository overview

⁠PSii Segmentation

This scripts segments pixels based on experimentally-derived pixel thresholds. Refer to Herrit et al., 2021⁠ for more information about pixel thresholds.

⁠Inputs

Path to directory containing GeoTIF images.

⁠Outputs

CSV file containing image thresholds for each plot.

⁠Arguments and Flags

• Positional Arguments:

  • Directories containing TIF images: 'dirs', nargs='+'

• Optional Arguments:

  • Output directory: '-o', '--outdir', default='sii_segmentation_out'