(unofficial) Discrover - Discover discriminative sequence motifs
75
website: https://github.com/maaskola/discrover
Jonas Maaskola, Nikolaus Rajewsky, Binding site discovery from nucleic acid sequences by discriminative learning of hidden Markov models, Nucleic Acids Research, Volume 42, Issue 21, 1 December 2014, Pages 12995–13011, https://doi.org/10.1093/nar/gku1083
Part of plachta11b diploma. Compatible with rootless singularity using readonly filesystem.
In case of bugs or questions do not hesitate to write mail (short and simple)
FROM ubuntu:16.04
RUN apt-get update && apt-get install -y \
git \
cmake \
g++ \
libboost-all-dev \
texlive \
texlive-latex-base \
latex-xcolor \
texlive-latex-extra \
pgf \
libcairo2-dev \
&& rm -rf /var/lib/apt/lists/*
RUN git clone https://github.com/maaskola/discrover.git
WORKDIR /discrover
RUN apt-get update && apt-get install -y imagemagick man
RUN mkdir /discrover/package
RUN mkdir build && cd build && cmake .. -DCMAKE_INSTALL_PREFIX=/discrover/package -DWITH_RMATHLIB=OFF && make && make install
ENV LD_LIBRARY_PATH $LD_LIBRARY_PATH:/discrover/package/lib
ENV PATH $PATH:/discrover/package/bin
ENV MANPATH $MANPATH:/discrover/package/share/man
CMD [ "discrover" ]
Content type
Image
Digest
Size
1.2 GB
Last updated
about 6 years ago
docker pull plachta11b/discrover:0.1